Medicine Notes Biochemistry Notes
This includes a set of detailed but concise notes on glycogen metabolism, fats transport, nitrogen transport, principles of glycogen metabolism, control of gene expression, synthesis of DNA vs RNA, DNA suitability, factors in genetic disease incidence, regulatory principles in metabolism, methods of genetic analysis, Sanger sequencing, the respiratory chain, the ornithine/urea cycle, and fatty acid metabolism. There are also two essays on what determines protein structure and how enzymes are suit...
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Control of glycogen metabolism in the liver and muscle
Glycogen catabolism:
Glycogen is broken down by the following enzymes:
Glycogen phosphorylase removes one glucosyl residue at A time from the non-reducing ends of glycogen, catalysing the following reaction:
Glycogen(n) + Pi glucose-1-phosphate + glycogen(n-1)
Glycogen phosphorylase can only act on α-1,4 glycosidic linkages until 4 residues away from a branching α-1-6 linkage
The bifunctional debranching enzyme moves the next 3 residues to another branch (transferase site) and cleaves the α-1,4 linkage to release the last glucose (α-1,6 glucosidase site)
This leaves one unbranched elongated chain for glycogen phosphorylase
The glucose-1-phosphate released is converted to glucose-6-phosphate by phosphoglucomutase
Muscle and liver differences are reflected in glycogen catabolism control:
Glucose-6-phosphate enters glycolysis in most tissues inc. muscle, but the liver expresses glucose-6-phosphatase (in the lumen of ER) so the glucose-6-phosphate can be converted to glucose and released
Muscle uses glucose to produce ATP for its own energy use whereas liver provides glucose for peripheral tissues; this necessitates different regulation in these tissues
Control is primarily of glycogen phosphorylase, which is the rate-limiting process of glycogen catabolism and is expressed as different isozymes in liver and muscle
Both isozymes have a phosphorylase A and a phosphorylase B isoform; phosphorylase A is phosphorylated
Both isoforms have an active, relaxed (R) and inactive, tense (T) state
Phosphorylase B’s equilibrium strongly favours the T state; phosphorylase A’s equilibrium strongly favours the R state
In muscle:
Most phosphorylase is in the B isoform at rest
High AMP ratios (signalling exercise) allosterically stabilises the R state of phosphorylase B
ATP competes with AMP for this binding site, so abundant energy promotes the T state
Glucose-6-phosphate, phosphorylase B’s product, also favours the T state
Phosphorylase A is active independent of AMP, ATP or G6P, so phosphorylase B is converted to phosphorylase A via phosphorylase kinase upon hormonal stimulation
Adrenaline (signalling impending exercise) initiates a cascade via β-adrenoreceptors:
Gs activated adenylate cyclase activated [cAMP] increases PKA activated phosphorylase kinase phosphorylated glycogen phosphorylase B phosphorylated [glycogen phosphorylase A] increases
Phosphorylase kinase is also stimulated upon electrical excitation of the cell and upon [Ca2+] increasing (both of which signal contraction)
Ca2+activates phosphorylase kinase because one of its units is calmodulin
Maximum activity of phosphorylase kinase is only achieved with both high calcium levels and phosphorylation
In the liver:
In liver, phosphorylase is not responsive to AMP as the liver’s energy charge never dramatically falls
Glucose binds to phosphorylase A,...
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This includes a set of detailed but concise notes on glycogen metabolism, fats transport, nitrogen transport, principles of glycogen metabolism, control of gene expression, synthesis of DNA vs RNA, DNA suitability, factors in genetic disease incidence, regulatory principles in metabolism, methods of genetic analysis, Sanger sequencing, the respiratory chain, the ornithine/urea cycle, and fatty acid metabolism. There are also two essays on what determines protein structure and how enzymes are suit...
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